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check MutuallyExclusiveFlags across parent command chain

check MutuallyExclusiveFlags across parent command chain: a task in repo2rlenv-commit-runtime-test: repo2rlenv-commit-runtime (Harbor dataset). Title: check MutuallyExclusiveFlags across parent command chain

The task

**Title:** check MutuallyExclusiveFlags across parent command chain

Part of AdithyaSK/repo2rlenv-commit-runtime-test.