I want Gnomix's command-line inference run to support an optional BED segment export controlled by the YAML…

I want Gnomix's command-line inference run to support an optional BED segment export controlled by the YAML…: a task in MiMo-V2.6-RL-harbor-code: MiMo-V2.6-RL Code (Harbor) (Harbor dataset). For each haplotype column in the MSP output, the command should write one tab-separated BED-style file…

The task

For each haplotype column in the MSP output, the command should write one tab-separated BED-style file under `query_results_bed`, naming files by replacing dots in the haplotype name with underscores and appending `.bed` (for example `NA001.0` becomes `NA001_0.bed`). Each file should have the columns `chm`, `spos`,…

Part of FineEnvs/MiMo-V2.6-RL-harbor-code.