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You are working on the opencobra/cobrapy repository. The source code is checked out at /testbed at commit…

You are working on the opencobra/cobrapy repository. The source code is checked out at /testbed at commit…: a task in SWE-Lego-RL-2699 (Harbor dataset). Hello, I am changing all the GPRs of my model because I have re-annotated the genome. And I have noticed that the old gene objects are in the…

The task

Hello, I am changing all the GPRs of my model because I have re-annotated the genome. And I have noticed that the old gene objects are in the model, although there is non-reactions associated. I thought that when you changed all the GPRs associated with one gene, the gene object was removed, but is not happening.

Part of Lego-X/Lego-RL-2699.