When using the existing generate plink API after a query variants call, the exported outputs do not include…
When using the existing generate plink API after a query variants call, the exported outputs do not include…: a task in LegoFlow-SWE (Harbor dataset). BGEN output - Must be version 1.3‑compatible. - For every sample in a variant, if the GenomicsDB array contains valid PL or GL fields, those…
The task
**BGEN output** - Must be version 1.3‑compatible. - For every sample in a variant, if the GenomicsDB array contains valid `PL` or `GL` fields, those likelihoods must be converted to unphased genotype probability data in the BGEN record. If neither `PL` nor `GL` is available for a call, the call must be represented…
Part of Lego-X/LegoFlow-SWE.