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Multi-stanza check command and configuration parsing fix for indexed option dependencies

Multi-stanza check command and configuration parsing fix for indexed option dependencies: a task in LegoFlow-SWE (Harbor dataset). Currently, the check command only checks a single stanza, even when no stanza is explicitly specified. It should instead check all stanzas defined in the…

The task

Currently, the `check` command only checks a single stanza, even when no stanza is explicitly specified. It should instead check all stanzas defined in the configuration. Additionally, a configuration parsing bug prevents proper validation of indexed options that depend on non-indexed options, causing configurations…

Part of Lego-X/LegoFlow-SWE.