HF RL Explorer

Feature request: High-level API for base modification iteration from SAM/BAM Mm/Ml tags

Feature request: High-level API for base modification iteration from SAM/BAM Mm/Ml tags: a task in LegoFlow-SWE (Harbor dataset). Currently, htslib provides no built-in support for parsing and iterating over the base modification data stored in SAM/BAM records via the Mm and Ml tags (as defined in…

The task

Currently, htslib provides no built-in support for parsing and iterating over the base modification data stored in SAM/BAM records via the **Mm** and **Ml** tags (as defined in the SAM specification). Users who need this information have to manually parse these complex tags, which is error-prone, especially when…

Part of Lego-X/LegoFlow-SWE.