I want Scoary to install a vcf2scoary command for converting haploid VCF files into the Roary/Scoary-style…

I want Scoary to install a vcf2scoary command for converting haploid VCF files into the Roary/Scoary-style…: a task in MiMo-V2.6-RL-oss: Agentic RL Environments (MiMo RL release). I want Scoary to install a vcf2scoary command for converting haploid VCF files into the Roary/Scoary-style…

The task

I want Scoary to install a vcf2scoary command for converting haploid VCF files into the Roary/Scoary-style presence/absence CSV that the main scoary command accepts. The command should run as vcf2scoary [--out PATH] [--types LIST] [--force] <VCF_file>, defaulting the output…

Part of XiaomiMiMo/MiMo-V2.6-RL-oss.